Genome Biology & Applied Bioinformatics

Genome Biology & Applied Bioinformatics

Genome Biology &

Applied Bioinformatics Major Databases/Portals Mehmet Tevfik DORAK, MD PhD

YOUR FUTURE STARTS WITH HOPE

Schedule Outline Genome browsers

eQTL / ncRNA / CNV browsers ENCODE, RegulomeDB, HaploReg IHEC Protein databases

Immunoinformatics databases Cancer genome databases BioMarts GWAS databases

Disease Databases Comparative Toxicogenomics Database (CTDbase) Major Bioinformatics Portals

NCBI https://www.ncbi.nlm.nih.gov

EBI (EMBL) http://www.ebi.ac.uk

SIB http://www.isb-sib.ch/services-infrastructure/databases-software

Major Bioinformatics Portals: NCBI Major Bioinformatics Portals:

EMBL Major Bioinformatics Portals: SIB

Major Genome Browsers Genome Browsers

eQTL Browsers GTEx Blood eQTL Browser

Chicago eQTL Browser SCAN ncRNA Browsers

CNV Browsers ENCODE, HaploReg, RegulomeDB

https://www.encodeproject.org http://www.broadinstitute.org/mammals/haploreg/haploreg_v4.php http://regulomedb.org

IHEC Portal Protein Databases

ImmunoInformatics Databases BioMarts

GWAS Databases Disease Databases

Disease Connect CoreMine

Disease Databases: Disease Connect Disease Databases: Disease

Connect Disease Databases: CoreMine

Disease Databases: CoreMine Gene x Environment Interactions Database

Other Databases Other Databases

Other Databases Looking forward

YOUR FUTURE STARTS WITH HOPE

.. YOUR FUTURE STARTS WITH HOPE

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